LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Palbociclib | 180619_MC_11 | 14013 | 0.0201 | 54 | 229 | 13 | 19 | Palbociclib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_6 | 283 | 0.0198 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00328 | 0.9684 |
Palbociclib | 180619_MC_12 | 14839 | 0.0280 | 112 | 307 | 3 | 19 | Palbociclib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_7 | 419 | 0.0275 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00439 | 0.9932 |
Palbociclib | 180619_MC_12 | 15564 | 0.0307 | 126 | 356 | 13 | 8 | Palbociclib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_8 | 482 | 0.0300 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00696 | 1.0141 |
Palbociclib | 180619_MC_12 | 15341 | 0.0245 | 78 | 299 | 14 | 11 | Palbociclib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_9 | 377 | 0.0240 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00091 | 1.0078 |
Palbociclib | 180619_MC_10 | 10616 | 0.0223 | 68 | 170 | 9 | 7 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_1 | 238 | 0.0219 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00115 | 0.8523 |
Palbociclib | 180619_MC_10 | 9244 | 0.0198 | 57 | 127 | 9 | 16 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_2 | 184 | 0.0195 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00356 | 0.7970 |
Palbociclib | 180619_MC_10 | 13608 | 0.0190 | 53 | 207 | 11 | 15 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_3 | 260 | 0.0187 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00433 | 0.9558 |
Palbociclib | 180619_MC_11 | 12262 | 0.0218 | 66 | 203 | 3 | 10 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_4 | 269 | 0.0215 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00161 | 0.9117 |
Palbociclib | 180619_MC_11 | 13595 | 0.0279 | 113 | 269 | 3 | 15 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_5 | 382 | 0.0273 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00426 | 0.9554 |
Palbociclib | 180619_MC_11 | 12846 | 0.0247 | 79 | 240 | 5 | 3 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_6 | 319 | 0.0242 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00116 | 0.9313 |
Palbociclib | 180619_MC_12 | 11875 | 0.0216 | 90 | 168 | 4 | 19 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_7 | 258 | 0.0213 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00181 | 0.8983 |
Palbociclib | 180619_MC_12 | 15293 | 0.0222 | 105 | 237 | 10 | 16 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_8 | 342 | 0.0219 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00120 | 1.0064 |
Palbociclib | 180619_MC_12 | 14879 | 0.0240 | 123 | 237 | 11 | 3 | Palbociclib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_9 | 360 | 0.0236 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00055 | 0.9944 |
Palbociclib | 180619_MC_10 | 6729 | 0.0232 | 76 | 82 | 5 | 12 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_1 | 158 | 0.0229 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00013 | 0.6763 |
Palbociclib | 180619_MC_10 | 7683 | 0.0168 | 54 | 76 | 8 | 6 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_2 | 130 | 0.0166 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00644 | 0.7257 |
Palbociclib | 180619_MC_10 | 10757 | 0.0187 | 59 | 143 | 14 | 11 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_3 | 202 | 0.0184 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00464 | 0.8576 |
Palbociclib | 180619_MC_11 | 9977 | 0.0220 | 77 | 144 | 4 | 11 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_4 | 221 | 0.0217 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00140 | 0.8273 |
Palbociclib | 180619_MC_11 | 11160 | 0.0209 | 52 | 182 | 5 | 6 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_5 | 234 | 0.0205 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00254 | 0.8727 |
Palbociclib | 180619_MC_11 | 12084 | 0.0199 | 61 | 181 | 13 | 11 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_6 | 242 | 0.0196 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00344 | 0.9056 |
Palbociclib | 180619_MC_12 | 14165 | 0.0227 | 116 | 208 | 8 | 17 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_7 | 324 | 0.0224 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00071 | 0.9730 |
Palbociclib | 180619_MC_12 | 12909 | 0.0206 | 77 | 190 | 12 | 3 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_8 | 267 | 0.0203 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00281 | 0.9333 |
Palbociclib | 180619_MC_12 | 12706 | 0.0180 | 66 | 164 | 12 | 5 | Palbociclib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_9 | 230 | 0.0178 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00529 | 0.9266 |
Palbociclib | 180619_MC_10 | 2907 | 0.0534 | 124 | 38 | 3 | 11 | Palbociclib | 0.332666627 | treatment | 72 | 2 | MCF10A-GM_1 | 162 | 0.0528 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02971 | 0.3949 |
Palbociclib | 180619_MC_10 | 3194 | 0.0376 | 81 | 42 | 4 | 21 | Palbociclib | 0.332666627 | treatment | 72 | 2 | MCF10A-GM_2 | 123 | 0.0371 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01401 | 0.4239 |
Palbociclib | 180619_MC_10 | 4889 | 0.0246 | 73 | 49 | 9 | 18 | Palbociclib | 0.332666627 | treatment | 72 | 2 | MCF10A-GM_3 | 122 | 0.0243 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00127 | 0.5630 |