LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Neratinib | 180619_MC_12 | 16018 | 0.0225 | 101 | 262 | 4 | 9 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_7 | 363 | 0.0222 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00091 | 1.0269 |
Neratinib | 180619_MC_12 | 15017 | 0.0244 | 120 | 250 | 8 | 15 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_8 | 370 | 0.0240 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00097 | 0.9984 |
Neratinib | 180619_MC_12 | 14600 | 0.0235 | 116 | 230 | 8 | 18 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_9 | 346 | 0.0232 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00008 | 0.9861 |
Neratinib | 180619_MC_10 | 3677 | 0.0310 | 66 | 50 | 11 | 14 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_1 | 116 | 0.0306 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00751 | 0.4685 |
Neratinib | 180619_MC_10 | 3349 | 0.0239 | 38 | 43 | 14 | 15 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_2 | 81 | 0.0236 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00054 | 0.4388 |
Neratinib | 180619_MC_10 | 3429 | 0.0271 | 41 | 53 | 14 | 18 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_3 | 94 | 0.0267 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00361 | 0.4462 |
Neratinib | 180619_MC_11 | 6448 | 0.0223 | 45 | 100 | 6 | 5 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_4 | 145 | 0.0220 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00108 | 0.6607 |
Neratinib | 180619_MC_11 | 6157 | 0.0255 | 84 | 75 | 8 | 6 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_5 | 159 | 0.0252 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00210 | 0.6440 |
Neratinib | 180619_MC_11 | 7437 | 0.0280 | 94 | 117 | 9 | 5 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_6 | 211 | 0.0276 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00451 | 0.7134 |
Neratinib | 180619_MC_12 | 13596 | 0.0217 | 102 | 195 | 8 | 5 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_7 | 297 | 0.0214 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00170 | 0.9554 |
Neratinib | 180619_MC_12 | 11193 | 0.0256 | 108 | 181 | 11 | 15 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_8 | 289 | 0.0252 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00210 | 0.8739 |
Neratinib | 180619_MC_12 | 12837 | 0.0191 | 87 | 160 | 12 | 7 | Neratinib | 0.099799997 | treatment | 72 | 2 | MCF10A-GM_9 | 247 | 0.0189 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00420 | 0.9310 |
Neratinib | 180619_MC_10 | 1225 | 0.0763 | 60 | 38 | 3 | 5 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_1 | 98 | 0.0741 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.05100 | 0.1544 |
Neratinib | 180619_MC_10 | 1428 | 0.0684 | 64 | 38 | 10 | 8 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_2 | 102 | 0.0667 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.04359 | 0.1938 |
Neratinib | 180619_MC_10 | 1268 | 0.0715 | 61 | 34 | 11 | 19 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_3 | 95 | 0.0697 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.04662 | 0.1631 |
Neratinib | 180619_MC_11 | 1974 | 0.0457 | 61 | 32 | 3 | 22 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_4 | 93 | 0.0450 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02192 | 0.2815 |
Neratinib | 180619_MC_11 | 2602 | 0.0395 | 57 | 48 | 9 | 16 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_5 | 105 | 0.0388 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01571 | 0.3614 |
Neratinib | 180619_MC_11 | 2584 | 0.0442 | 65 | 52 | 14 | 9 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_6 | 117 | 0.0433 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02024 | 0.3594 |
Neratinib | 180619_MC_12 | 4180 | 0.0321 | 87 | 50 | 4 | 6 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_7 | 137 | 0.0317 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00866 | 0.5103 |
Neratinib | 180619_MC_12 | 3729 | 0.0453 | 114 | 60 | 5 | 17 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_8 | 174 | 0.0446 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02151 | 0.4730 |
Neratinib | 180619_MC_12 | 4158 | 0.0413 | 127 | 50 | 9 | 16 | Neratinib | 0.299399965 | treatment | 72 | 2 | MCF10A-GM_9 | 177 | 0.0408 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01776 | 0.5086 |
Neratinib | 180619_MC_10 | 720 | 0.2028 | 64 | 95 | 10 | 3 | Neratinib | 0.997999609 | treatment | 72 | 2 | MCF10A-GM_1 | 159 | 0.1809 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.15781 | 0.0276 |
Neratinib | 180619_MC_10 | 777 | 0.2529 | 85 | 133 | 10 | 21 | Neratinib | 0.997999609 | treatment | 72 | 2 | MCF10A-GM_2 | 218 | 0.2191 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.19602 | 0.0449 |
Neratinib | 180619_MC_10 | 757 | 0.2776 | 93 | 143 | 11 | 20 | Neratinib | 0.997999609 | treatment | 72 | 2 | MCF10A-GM_3 | 236 | 0.2377 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.21459 | 0.0389 |
Neratinib | 180619_MC_11 | 959 | 0.1657 | 79 | 93 | 3 | 12 | Neratinib | 0.997999609 | treatment | 72 | 2 | MCF10A-GM_4 | 172 | 0.1521 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.12900 | 0.0941 |