LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Vorinostat | 180615_MC_08 | 772 | 0.1347 | 67 | 46 | 12 | 16 | Vorinostat | 9.98 | treatment | 72 | 1 | MCF10A-GM_9 | 113 | 0.1277 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.10429 | 0.0645 |
Alpelisib | 180619_MC_10 | 15639 | 0.0226 | 71 | 284 | 7 | 14 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_1 | 355 | 0.0222 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00088 | 1.0163 |
Alpelisib | 180619_MC_10 | 15238 | 0.0224 | 64 | 279 | 8 | 11 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_2 | 343 | 0.0220 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00106 | 1.0048 |
Alpelisib | 180619_MC_10 | 14102 | 0.0172 | 44 | 199 | 12 | 14 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 243 | 0.0169 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00613 | 0.9711 |
Alpelisib | 180619_MC_11 | 13705 | 0.0232 | 81 | 239 | 3 | 13 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_4 | 320 | 0.0228 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00026 | 0.9588 |
Alpelisib | 180619_MC_11 | 15246 | 0.0234 | 65 | 294 | 8 | 17 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_5 | 359 | 0.0230 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00007 | 1.0051 |
Alpelisib | 180619_MC_11 | 14336 | 0.0190 | 47 | 226 | 13 | 15 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_6 | 273 | 0.0187 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00439 | 0.9782 |
Alpelisib | 180619_MC_12 | 14666 | 0.0245 | 128 | 234 | 9 | 21 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_7 | 362 | 0.0241 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00101 | 0.9881 |
Alpelisib | 180619_MC_12 | 15513 | 0.0292 | 157 | 301 | 11 | 6 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_8 | 458 | 0.0287 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00560 | 1.0127 |
Alpelisib | 180619_MC_12 | 14538 | 0.0216 | 59 | 257 | 13 | 22 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_9 | 316 | 0.0213 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00180 | 0.9843 |
Alpelisib | 180619_MC_10 | 14504 | 0.0275 | 78 | 323 | 3 | 12 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_1 | 401 | 0.0269 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00383 | 0.9833 |
Alpelisib | 180619_MC_10 | 14011 | 0.0189 | 34 | 231 | 13 | 15 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_2 | 265 | 0.0186 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00451 | 0.9683 |
Alpelisib | 180619_MC_10 | 14043 | 0.0184 | 51 | 208 | 13 | 21 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_3 | 259 | 0.0181 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00496 | 0.9693 |
Alpelisib | 180619_MC_11 | 14546 | 0.0216 | 55 | 260 | 5 | 4 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_4 | 315 | 0.0212 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00188 | 0.9845 |
Alpelisib | 180619_MC_11 | 14357 | 0.0197 | 87 | 198 | 10 | 21 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_5 | 285 | 0.0195 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00361 | 0.9789 |
Alpelisib | 180619_MC_11 | 15319 | 0.0202 | 57 | 253 | 12 | 5 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_6 | 310 | 0.0198 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00324 | 1.0072 |
Alpelisib | 180619_MC_12 | 15239 | 0.0259 | 85 | 312 | 13 | 21 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_7 | 397 | 0.0254 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00232 | 1.0049 |
Alpelisib | 180619_MC_12 | 14657 | 0.0245 | 69 | 292 | 14 | 4 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_8 | 361 | 0.0240 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00096 | 0.9878 |
Alpelisib | 180619_MC_12 | 14816 | 0.0207 | 67 | 241 | 14 | 10 | Alpelisib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_9 | 308 | 0.0204 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00271 | 0.9925 |
Alpelisib | 180619_MC_10 | 12737 | 0.0213 | 56 | 216 | 13 | 4 | Alpelisib | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_1 | 272 | 0.0209 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00217 | 0.9277 |
Alpelisib | 180619_MC_10 | 13561 | 0.0212 | 58 | 231 | 13 | 13 | Alpelisib | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_2 | 289 | 0.0209 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00221 | 0.9543 |
Alpelisib | 180619_MC_10 | 12915 | 0.0177 | 47 | 183 | 14 | 3 | Alpelisib | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_3 | 230 | 0.0175 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00558 | 0.9335 |
Alpelisib | 180619_MC_11 | 13333 | 0.0233 | 72 | 241 | 3 | 18 | Alpelisib | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_4 | 313 | 0.0229 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00014 | 0.9471 |
Alpelisib | 180619_MC_11 | 14436 | 0.0212 | 46 | 261 | 6 | 7 | Alpelisib | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_5 | 307 | 0.0208 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00225 | 0.9812 |
Alpelisib | 180619_MC_11 | 13917 | 0.0181 | 56 | 197 | 14 | 3 | Alpelisib | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_6 | 253 | 0.0179 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00522 | 0.9654 |