LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Trametinib | 180619_MC_11 | 851 | 0.1015 | 65 | 28 | 8 | 21 | Trametinib | 0.998 | treatment | 72 | 2 | MCF10A-GM_5 | 93 | 0.0985 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.07544 | 0.0659 |
Trametinib | 180619_MC_11 | 1041 | 0.1120 | 84 | 42 | 9 | 22 | Trametinib | 0.998 | treatment | 72 | 2 | MCF10A-GM_6 | 126 | 0.1080 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.08489 | 0.1140 |
Trametinib | 180619_MC_12 | 979 | 0.1497 | 110 | 53 | 6 | 20 | Trametinib | 0.998 | treatment | 72 | 2 | MCF10A-GM_7 | 163 | 0.1427 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.11966 | 0.0991 |
Trametinib | 180619_MC_12 | 953 | 0.2075 | 136 | 90 | 13 | 4 | Trametinib | 0.998 | treatment | 72 | 2 | MCF10A-GM_8 | 226 | 0.1917 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.16861 | 0.0926 |
Trametinib | 180619_MC_12 | 1015 | 0.1123 | 89 | 35 | 14 | 7 | Trametinib | 0.998 | treatment | 72 | 2 | MCF10A-GM_9 | 124 | 0.1089 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.08579 | 0.1078 |
Vorinostat | 180619_MC_10 | 15087 | 0.0204 | 61 | 248 | 5 | 13 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_1 | 309 | 0.0201 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00300 | 1.0005 |
Vorinostat | 180619_MC_10 | 15179 | 0.0219 | 41 | 293 | 6 | 11 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_2 | 334 | 0.0215 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00154 | 1.0031 |
Vorinostat | 180619_MC_10 | 15536 | 0.0223 | 59 | 288 | 8 | 10 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 347 | 0.0218 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00123 | 1.0133 |
Vorinostat | 180619_MC_11 | 14282 | 0.0251 | 87 | 274 | 7 | 7 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_4 | 361 | 0.0247 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00158 | 0.9766 |
Vorinostat | 180619_MC_11 | 14369 | 0.0208 | 71 | 229 | 8 | 22 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_5 | 300 | 0.0205 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00262 | 0.9792 |
Vorinostat | 180619_MC_11 | 14134 | 0.0242 | 77 | 267 | 9 | 3 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_6 | 344 | 0.0238 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00069 | 0.9721 |
Vorinostat | 180619_MC_12 | 15695 | 0.0218 | 94 | 250 | 5 | 21 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_7 | 344 | 0.0214 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00163 | 1.0178 |
Vorinostat | 180619_MC_12 | 15667 | 0.0215 | 96 | 243 | 8 | 12 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_8 | 339 | 0.0212 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00189 | 1.0171 |
Vorinostat | 180619_MC_12 | 15151 | 0.0216 | 68 | 260 | 12 | 18 | Vorinostat | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_9 | 328 | 0.0212 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00188 | 1.0023 |
Vorinostat | 180619_MC_10 | 15234 | 0.0205 | 50 | 264 | 8 | 12 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_1 | 314 | 0.0202 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00288 | 1.0047 |
Vorinostat | 180619_MC_10 | 14436 | 0.0169 | 22 | 222 | 13 | 17 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_2 | 244 | 0.0166 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00645 | 0.9812 |
Vorinostat | 180619_MC_10 | 14504 | 0.0199 | 47 | 242 | 13 | 19 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_3 | 289 | 0.0195 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00354 | 0.9833 |
Vorinostat | 180619_MC_11 | 14452 | 0.0249 | 74 | 287 | 7 | 6 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_4 | 361 | 0.0244 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00130 | 0.9817 |
Vorinostat | 180619_MC_11 | 15129 | 0.0267 | 95 | 312 | 7 | 12 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_5 | 407 | 0.0262 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00312 | 1.0017 |
Vorinostat | 180619_MC_11 | 15050 | 0.0204 | 41 | 267 | 11 | 12 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_6 | 308 | 0.0201 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00302 | 0.9994 |
Vorinostat | 180619_MC_12 | 15345 | 0.0259 | 115 | 286 | 3 | 18 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_7 | 401 | 0.0255 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00239 | 1.0079 |
Vorinostat | 180619_MC_12 | 15769 | 0.0229 | 92 | 271 | 5 | 22 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_8 | 363 | 0.0225 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00057 | 1.0199 |
Vorinostat | 180619_MC_12 | 15170 | 0.0252 | 98 | 287 | 10 | 19 | Vorinostat | 0.00998 | treatment | 72 | 2 | MCF10A-GM_9 | 385 | 0.0248 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00168 | 1.0029 |
Vorinostat | 180619_MC_10 | 14448 | 0.0224 | 47 | 278 | 6 | 19 | Vorinostat | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_1 | 325 | 0.0220 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00107 | 0.9816 |
Vorinostat | 180619_MC_10 | 15024 | 0.0232 | 66 | 284 | 8 | 18 | Vorinostat | 0.033266667 | treatment | 72 | 2 | MCF10A-GM_2 | 350 | 0.0228 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00031 | 0.9986 |