LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Neratinib | 180619_MC_12 | 15285 | 0.0224 | 83 | 262 | 13 | 16 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_9 | 345 | 0.0221 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00100 | 1.0062 |
Neratinib | 180619_MC_10 | 14470 | 0.0243 | 51 | 302 | 5 | 15 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_1 | 353 | 0.0238 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00074 | 0.9823 |
Neratinib | 180619_MC_10 | 14982 | 0.0217 | 57 | 269 | 9 | 8 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_2 | 326 | 0.0213 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00178 | 0.9974 |
Neratinib | 180619_MC_10 | 12994 | 0.0204 | 37 | 229 | 13 | 12 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 266 | 0.0201 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00301 | 0.9361 |
Neratinib | 180619_MC_11 | 13907 | 0.0220 | 53 | 254 | 4 | 21 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_4 | 307 | 0.0216 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00148 | 0.9651 |
Neratinib | 180619_MC_11 | 15328 | 0.0249 | 84 | 299 | 8 | 16 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_5 | 383 | 0.0244 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00130 | 1.0074 |
Neratinib | 180619_MC_11 | 14087 | 0.0210 | 59 | 238 | 11 | 4 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_6 | 297 | 0.0206 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00243 | 0.9706 |
Neratinib | 180619_MC_12 | 15061 | 0.0240 | 88 | 276 | 4 | 7 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_7 | 364 | 0.0236 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00052 | 0.9997 |
Neratinib | 180619_MC_12 | 15406 | 0.0261 | 95 | 310 | 4 | 16 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_8 | 405 | 0.0256 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00254 | 1.0096 |
Neratinib | 180619_MC_12 | 15469 | 0.0246 | 76 | 307 | 6 | 7 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_9 | 383 | 0.0242 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00109 | 1.0114 |
Neratinib | 180619_MC_10 | 12954 | 0.0183 | 39 | 199 | 6 | 9 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_1 | 238 | 0.0180 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00503 | 0.9348 |
Neratinib | 180619_MC_10 | 14145 | 0.0197 | 65 | 215 | 7 | 21 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_2 | 280 | 0.0194 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00366 | 0.9724 |
Neratinib | 180619_MC_10 | 13336 | 0.0184 | 41 | 205 | 14 | 20 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_3 | 246 | 0.0181 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00496 | 0.9471 |
Neratinib | 180619_MC_11 | 15129 | 0.0224 | 65 | 276 | 3 | 9 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_4 | 341 | 0.0220 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00103 | 1.0017 |
Neratinib | 180619_MC_11 | 15596 | 0.0242 | 58 | 321 | 8 | 7 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_5 | 379 | 0.0237 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00065 | 1.0150 |
Neratinib | 180619_MC_11 | 14264 | 0.0187 | 40 | 228 | 14 | 14 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_6 | 268 | 0.0184 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00463 | 0.9760 |
Neratinib | 180619_MC_12 | 15391 | 0.0308 | 148 | 331 | 5 | 5 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_7 | 479 | 0.0302 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00711 | 1.0092 |
Neratinib | 180619_MC_12 | 15724 | 0.0263 | 129 | 288 | 9 | 12 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_8 | 417 | 0.0258 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00276 | 1.0187 |
Neratinib | 180619_MC_12 | 14831 | 0.0199 | 78 | 218 | 14 | 22 | Neratinib | 0.00998 | treatment | 72 | 2 | MCF10A-GM_9 | 296 | 0.0196 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00351 | 0.9930 |
Neratinib | 180619_MC_10 | 9675 | 0.0215 | 47 | 162 | 5 | 8 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_1 | 209 | 0.0211 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00193 | 0.8150 |
Neratinib | 180619_MC_10 | 9684 | 0.0207 | 46 | 155 | 6 | 12 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_2 | 201 | 0.0203 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00274 | 0.8154 |
Neratinib | 180619_MC_10 | 10194 | 0.0211 | 61 | 155 | 7 | 18 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_3 | 216 | 0.0207 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00233 | 0.8359 |
Neratinib | 180619_MC_11 | 11686 | 0.0209 | 80 | 166 | 4 | 5 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_4 | 246 | 0.0206 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00246 | 0.8916 |
Neratinib | 180619_MC_11 | 11711 | 0.0271 | 59 | 260 | 5 | 10 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_5 | 319 | 0.0265 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00344 | 0.8925 |
Neratinib | 180619_MC_11 | 12918 | 0.0222 | 73 | 215 | 13 | 3 | Neratinib | 0.031603333 | treatment | 72 | 2 | MCF10A-GM_6 | 288 | 0.0218 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00127 | 0.9336 |