LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Alpelisib | 180619_MC_11 | 9344 | 0.0305 | 108 | 180 | 5 | 13 | Alpelisib | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_5 | 288 | 0.0299 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00683 | 0.8012 |
Alpelisib | 180619_MC_11 | 8747 | 0.0260 | 91 | 139 | 11 | 6 | Alpelisib | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_6 | 230 | 0.0256 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00255 | 0.7754 |
Alpelisib | 180619_MC_12 | 10259 | 0.0293 | 122 | 182 | 4 | 12 | Alpelisib | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_7 | 304 | 0.0288 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00571 | 0.8385 |
Alpelisib | 180619_MC_12 | 9617 | 0.0281 | 129 | 145 | 5 | 11 | Alpelisib | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_8 | 274 | 0.0277 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00463 | 0.8126 |
Alpelisib | 180619_MC_12 | 9429 | 0.0290 | 135 | 142 | 7 | 18 | Alpelisib | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_9 | 277 | 0.0285 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00546 | 0.8048 |
Alpelisib | 180619_MC_10 | 7146 | 0.0246 | 77 | 101 | 6 | 13 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_1 | 178 | 0.0243 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00123 | 0.6985 |
Alpelisib | 180619_MC_10 | 5876 | 0.0313 | 90 | 97 | 8 | 7 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_2 | 187 | 0.0308 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00777 | 0.6273 |
Alpelisib | 180619_MC_10 | 5796 | 0.0287 | 84 | 85 | 10 | 5 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_3 | 169 | 0.0283 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00526 | 0.6224 |
Alpelisib | 180619_MC_11 | 6873 | 0.0252 | 79 | 96 | 8 | 4 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_4 | 175 | 0.0248 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00176 | 0.6841 |
Alpelisib | 180619_MC_11 | 6772 | 0.0258 | 87 | 90 | 10 | 13 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_5 | 177 | 0.0255 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00240 | 0.6786 |
Alpelisib | 180619_MC_11 | 6423 | 0.0294 | 64 | 127 | 11 | 21 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_6 | 191 | 0.0289 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00580 | 0.6593 |
Alpelisib | 180619_MC_12 | 6622 | 0.0326 | 103 | 116 | 5 | 19 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_7 | 219 | 0.0320 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00894 | 0.6704 |
Alpelisib | 180619_MC_12 | 7480 | 0.0272 | 103 | 103 | 10 | 10 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_8 | 206 | 0.0268 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00373 | 0.7156 |
Alpelisib | 180619_MC_12 | 7313 | 0.0337 | 105 | 145 | 14 | 21 | Alpelisib | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_9 | 250 | 0.0331 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00998 | 0.7071 |
Alpelisib | 180619_MC_10 | 2802 | 0.0496 | 79 | 64 | 8 | 17 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_1 | 143 | 0.0486 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02548 | 0.3837 |
Alpelisib | 180619_MC_10 | 2495 | 0.0662 | 103 | 69 | 9 | 4 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_2 | 172 | 0.0645 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.04142 | 0.3490 |
Alpelisib | 180619_MC_10 | 2461 | 0.0458 | 72 | 44 | 12 | 19 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_3 | 116 | 0.0450 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02194 | 0.3449 |
Alpelisib | 180619_MC_11 | 3250 | 0.0580 | 128 | 68 | 3 | 11 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_4 | 196 | 0.0569 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.03380 | 0.4294 |
Alpelisib | 180619_MC_11 | 2834 | 0.0500 | 84 | 62 | 5 | 22 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_5 | 146 | 0.0490 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02592 | 0.3871 |
Alpelisib | 180619_MC_11 | 3311 | 0.0342 | 54 | 61 | 6 | 16 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_6 | 115 | 0.0336 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01049 | 0.4352 |
Alpelisib | 180619_MC_12 | 3314 | 0.0652 | 138 | 87 | 9 | 22 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_7 | 225 | 0.0636 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.04050 | 0.4355 |
Alpelisib | 180619_MC_12 | 3600 | 0.0400 | 76 | 71 | 10 | 14 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_8 | 147 | 0.0392 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01616 | 0.4617 |
Alpelisib | 180619_MC_12 | 3723 | 0.0499 | 102 | 89 | 14 | 14 | Alpelisib | 9.98 | treatment | 72 | 2 | MCF10A-GM_9 | 191 | 0.0488 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02572 | 0.4725 |
Dasatinib | 180619_MC_10 | 13415 | 0.0279 | 85 | 291 | 3 | 3 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_1 | 376 | 0.0273 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00419 | 0.9497 |
Dasatinib | 180619_MC_10 | 12996 | 0.0232 | 84 | 219 | 10 | 17 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_2 | 303 | 0.0228 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00029 | 0.9362 |