LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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| Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Taxol | 180615_MC_08 | 236 | 1.0902 | 152 | 271 | 14 | 15 | Paclitaxel | 0.312706472 | treatment | 72 | 1 | MCF10A-GM_8 | 423 | 0.6419 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.61848 | -0.1866 |
| Palbociclib | 180615_MC_06 | 12247 | 0.0280 | 71 | 274 | 10 | 12 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_1 | 345 | 0.0274 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00400 | 0.9933 |
| Palbociclib | 180615_MC_06 | 12899 | 0.0203 | 19 | 243 | 11 | 9 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_2 | 262 | 0.0199 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00349 | 1.0169 |
| Palbociclib | 180615_MC_06 | 12565 | 0.0242 | 41 | 264 | 14 | 10 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_3 | 305 | 0.0237 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00030 | 1.0050 |
| Palbociclib | 180615_MC_07 | 12772 | 0.0260 | 90 | 245 | 6 | 19 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_4 | 335 | 0.0256 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00216 | 1.0124 |
| Palbociclib | 180615_MC_07 | 12778 | 0.0217 | 65 | 214 | 12 | 14 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_5 | 279 | 0.0214 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00203 | 1.0126 |
| Palbociclib | 180615_MC_07 | 12450 | 0.0158 | 19 | 178 | 13 | 6 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_6 | 197 | 0.0156 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00782 | 1.0008 |
| Palbociclib | 180615_MC_08 | 12114 | 0.0269 | 57 | 271 | 8 | 20 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_7 | 328 | 0.0264 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00296 | 0.9884 |
| Palbociclib | 180615_MC_08 | 12110 | 0.0245 | 62 | 236 | 12 | 6 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_8 | 298 | 0.0240 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00062 | 0.9882 |
| Palbociclib | 180615_MC_08 | 13617 | 0.0303 | 70 | 345 | 13 | 6 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_9 | 415 | 0.0296 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00618 | 1.0419 |
| Palbociclib | 180615_MC_06 | 12397 | 0.0235 | 16 | 276 | 12 | 17 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_1 | 292 | 0.0230 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00039 | 0.9988 |
| Palbociclib | 180615_MC_06 | 13549 | 0.0276 | 32 | 343 | 13 | 8 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_2 | 375 | 0.0269 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00353 | 1.0396 |
| Palbociclib | 180615_MC_06 | 12862 | 0.0226 | 43 | 249 | 13 | 10 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_3 | 292 | 0.0222 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00120 | 1.0156 |
| Palbociclib | 180615_MC_07 | 12028 | 0.0180 | 53 | 165 | 6 | 3 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_4 | 218 | 0.0178 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00560 | 0.9852 |
| Palbociclib | 180615_MC_07 | 11832 | 0.0225 | 64 | 204 | 8 | 15 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_5 | 268 | 0.0221 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00125 | 0.9778 |
| Palbociclib | 180615_MC_07 | 12785 | 0.0206 | 31 | 233 | 13 | 7 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_6 | 264 | 0.0202 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00317 | 1.0129 |
| Palbociclib | 180615_MC_08 | 12194 | 0.0327 | 98 | 304 | 4 | 15 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_7 | 402 | 0.0319 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00852 | 0.9914 |
| Palbociclib | 180615_MC_08 | 12504 | 0.0217 | 32 | 240 | 7 | 5 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_8 | 272 | 0.0213 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00211 | 1.0027 |
| Palbociclib | 180615_MC_08 | 13208 | 0.0254 | 71 | 266 | 8 | 7 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_9 | 337 | 0.0249 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00148 | 1.0278 |
| Palbociclib | 180615_MC_06 | 11404 | 0.0216 | 26 | 221 | 5 | 22 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_1 | 247 | 0.0212 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00220 | 0.9613 |
| Palbociclib | 180615_MC_06 | 9552 | 0.0206 | 12 | 185 | 6 | 3 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_2 | 197 | 0.0202 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00319 | 0.8840 |
| Palbociclib | 180615_MC_06 | 10766 | 0.0247 | 49 | 218 | 14 | 22 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_3 | 267 | 0.0242 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | 0.00080 | 0.9359 |
| Palbociclib | 180615_MC_07 | 11686 | 0.0147 | 47 | 125 | 12 | 22 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_4 | 172 | 0.0145 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00889 | 0.9722 |
| Palbociclib | 180615_MC_07 | 12431 | 0.0165 | 17 | 189 | 13 | 10 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_5 | 206 | 0.0163 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00710 | 1.0001 |
| Palbociclib | 180615_MC_07 | 11596 | 0.0188 | 29 | 189 | 13 | 19 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_6 | 218 | 0.0185 | 586.3 | 196.0 | 12428 | 298.5 | 0.0234 | -0.00495 | 0.9688 |