LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist B in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20359)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Etoposide | 180622_BG_6 | 850 | 0.1701 | 132 | 35 | 4 | 19 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_2 | 167 | 0.1642 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.13808 | 0.0047 |
Etoposide | 180622_BG_6 | 906 | 0.1609 | 113 | 51 | 8 | 20 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_3 | 164 | 0.1533 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.12715 | 0.0187 |
Etoposide | 180622_BG_7 | 878 | 0.1488 | 90 | 54 | 6 | 8 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_4 | 144 | 0.1409 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.11478 | 0.0118 |
Etoposide | 180622_BG_7 | 751 | 0.1729 | 76 | 67 | 14 | 4 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_5 | 143 | 0.1600 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.13383 | -0.0221 |
Etoposide | 180622_BG_7 | 952 | 0.1386 | 80 | 63 | 14 | 17 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_6 | 143 | 0.1306 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.10447 | 0.0298 |
Etoposide | 180622_BG_8 | 784 | 0.1895 | 92 | 74 | 4 | 3 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_7 | 166 | 0.1747 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.14861 | -0.0129 |
Etoposide | 180622_BG_8 | 803 | 0.1612 | 84 | 59 | 8 | 10 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_8 | 143 | 0.1512 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.12504 | -0.0077 |
Etoposide | 180622_BG_8 | 749 | 0.1814 | 78 | 72 | 12 | 4 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_9 | 150 | 0.1669 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.14073 | -0.0226 |
Etoposide | 180622_BG_6 | 813 | 0.1957 | 153 | 36 | 4 | 15 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_1 | 189 | 0.1886 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.16250 | -0.0050 |
Etoposide | 180622_BG_6 | 559 | 0.2760 | 162 | 37 | 6 | 22 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_2 | 199 | 0.2625 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.23641 | -0.0830 |
Etoposide | 180622_BG_6 | 905 | 0.1403 | 93 | 47 | 10 | 7 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_3 | 140 | 0.1340 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.10785 | 0.0185 |
Etoposide | 180622_BG_7 | 875 | 0.1501 | 91 | 54 | 4 | 13 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_4 | 145 | 0.1422 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.11603 | 0.0110 |
Etoposide | 180622_BG_7 | 931 | 0.1708 | 129 | 52 | 7 | 17 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_5 | 181 | 0.1628 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.13664 | 0.0248 |
Etoposide | 180622_BG_7 | 896 | 0.1452 | 82 | 60 | 14 | 16 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_6 | 142 | 0.1368 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.11068 | 0.0163 |
Etoposide | 180622_BG_8 | 959 | 0.1466 | 71 | 80 | 9 | 8 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_7 | 151 | 0.1360 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.10991 | 0.0314 |
Etoposide | 180622_BG_8 | 859 | 0.1684 | 127 | 39 | 13 | 7 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_8 | 166 | 0.1620 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.13583 | 0.0070 |
Etoposide | 180622_BG_8 | 866 | 0.1589 | 84 | 67 | 13 | 12 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_9 | 151 | 0.1485 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.12235 | 0.0088 |
Neratinib | 180622_BG_6 | 20626 | 0.0316 | 100 | 554 | 3 | 13 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_1 | 654 | 0.0307 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00461 | 1.0131 |
Neratinib | 180622_BG_6 | 19446 | 0.0287 | 120 | 442 | 8 | 22 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_2 | 562 | 0.0281 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00196 | 0.9874 |
Neratinib | 180622_BG_6 | 20545 | 0.0246 | 100 | 407 | 11 | 17 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_3 | 507 | 0.0241 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00204 | 1.0114 |
Neratinib | 180622_BG_7 | 20452 | 0.0276 | 54 | 511 | 3 | 17 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_4 | 565 | 0.0269 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00076 | 1.0094 |
Neratinib | 180622_BG_7 | 20877 | 0.0241 | 47 | 458 | 14 | 10 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_5 | 505 | 0.0236 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00251 | 1.0184 |
Neratinib | 180622_BG_7 | 20361 | 0.0242 | 52 | 441 | 14 | 11 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_6 | 493 | 0.0236 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00248 | 1.0075 |
Neratinib | 180622_BG_8 | 20652 | 0.0309 | 54 | 586 | 4 | 5 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_7 | 640 | 0.0301 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00393 | 1.0137 |
Neratinib | 180622_BG_8 | 21170 | 0.0268 | 56 | 513 | 11 | 22 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_8 | 569 | 0.0262 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00005 | 1.0246 |