LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist B in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20359)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Etoposide | 180622_BG_7 | 10565 | 0.0218 | 73 | 159 | 7 | 14 | Etoposide | 0.099799999 | treatment | 72 | 2 | MCF10A-GM_4 | 232 | 0.0215 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00464 | 0.7400 |
Etoposide | 180622_BG_7 | 12089 | 0.0184 | 52 | 172 | 11 | 16 | Etoposide | 0.099799999 | treatment | 72 | 2 | MCF10A-GM_5 | 224 | 0.0182 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00793 | 0.7919 |
Etoposide | 180622_BG_7 | 12621 | 0.0152 | 40 | 153 | 11 | 20 | Etoposide | 0.099799999 | treatment | 72 | 2 | MCF10A-GM_6 | 193 | 0.0151 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.01106 | 0.8088 |
Etoposide | 180622_BG_8 | 12153 | 0.0216 | 58 | 206 | 3 | 22 | Etoposide | 0.099799999 | treatment | 72 | 2 | MCF10A-GM_7 | 264 | 0.0213 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00486 | 0.7939 |
Etoposide | 180622_BG_8 | 13450 | 0.0232 | 61 | 252 | 11 | 13 | Etoposide | 0.099799999 | treatment | 72 | 2 | MCF10A-GM_8 | 313 | 0.0227 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00338 | 0.8340 |
Etoposide | 180622_BG_8 | 12030 | 0.0265 | 67 | 254 | 11 | 17 | Etoposide | 0.099799999 | treatment | 72 | 2 | MCF10A-GM_9 | 321 | 0.0260 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00014 | 0.7899 |
Etoposide | 180622_BG_6 | 4705 | 0.0596 | 161 | 129 | 8 | 4 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_1 | 290 | 0.0581 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.03193 | 0.4588 |
Etoposide | 180622_BG_6 | 5287 | 0.0424 | 114 | 115 | 10 | 6 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_2 | 229 | 0.0415 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.01539 | 0.4963 |
Etoposide | 180622_BG_6 | 5058 | 0.0513 | 151 | 116 | 11 | 8 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_3 | 267 | 0.0501 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.02402 | 0.4819 |
Etoposide | 180622_BG_7 | 5478 | 0.0461 | 141 | 118 | 8 | 3 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_4 | 259 | 0.0451 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.01902 | 0.5079 |
Etoposide | 180622_BG_7 | 5223 | 0.0290 | 56 | 97 | 9 | 7 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_5 | 153 | 0.0285 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00233 | 0.4924 |
Etoposide | 180622_BG_7 | 4896 | 0.0393 | 92 | 104 | 11 | 7 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_6 | 196 | 0.0385 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.01237 | 0.4715 |
Etoposide | 180622_BG_8 | 5864 | 0.0315 | 80 | 107 | 6 | 22 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_7 | 187 | 0.0309 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00478 | 0.5305 |
Etoposide | 180622_BG_8 | 5843 | 0.0228 | 47 | 87 | 8 | 16 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_8 | 134 | 0.0224 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00371 | 0.5293 |
Etoposide | 180622_BG_8 | 5975 | 0.0301 | 64 | 118 | 10 | 11 | Etoposide | 0.316033316 | treatment | 72 | 2 | MCF10A-GM_9 | 182 | 0.0296 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00344 | 0.5367 |
Etoposide | 180622_BG_6 | 1107 | 0.1775 | 144 | 78 | 3 | 6 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_1 | 222 | 0.1670 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.14092 | 0.0642 |
Etoposide | 180622_BG_6 | 1043 | 0.1540 | 113 | 65 | 6 | 17 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_2 | 178 | 0.1458 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.11966 | 0.0505 |
Etoposide | 180622_BG_6 | 1052 | 0.1024 | 52 | 61 | 6 | 18 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_3 | 113 | 0.0970 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.07087 | 0.0525 |
Etoposide | 180622_BG_7 | 1216 | 0.1376 | 107 | 75 | 3 | 8 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_4 | 182 | 0.1302 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.10406 | 0.0862 |
Etoposide | 180622_BG_7 | 1270 | 0.1369 | 118 | 72 | 7 | 16 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_5 | 190 | 0.1301 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.10401 | 0.0966 |
Etoposide | 180622_BG_7 | 1172 | 0.1656 | 114 | 99 | 8 | 5 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_6 | 213 | 0.1538 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.12767 | 0.0775 |
Etoposide | 180622_BG_8 | 1229 | 0.1412 | 102 | 86 | 3 | 3 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_7 | 188 | 0.1327 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.10655 | 0.0887 |
Etoposide | 180622_BG_8 | 1742 | 0.0793 | 61 | 82 | 10 | 12 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_8 | 143 | 0.0759 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.04974 | 0.1747 |
Etoposide | 180622_BG_8 | 1474 | 0.1247 | 114 | 84 | 11 | 9 | Etoposide | 0.997999808 | treatment | 72 | 2 | MCF10A-GM_9 | 198 | 0.1184 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.09230 | 0.1327 |
Etoposide | 180622_BG_6 | 840 | 0.2630 | 179 | 89 | 3 | 4 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_1 | 268 | 0.2419 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.21575 | 0.0021 |