LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist B in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20359)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Vorinostat | 180614_BG_03 | 17415 | 0.0189 | 54 | 277 | 9 | 3 | Vorinostat | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_6 | 331 | 0.0187 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00134 | 1.0098 |
Vorinostat | 180614_BG_02 | 16445 | 0.0225 | 47 | 324 | 6 | 11 | Vorinostat | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_2 | 371 | 0.0221 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00207 | 0.9830 |
Vorinostat | 180614_BG_04 | 16418 | 0.0235 | 129 | 260 | 12 | 18 | Vorinostat | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_9 | 389 | 0.0231 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00315 | 0.9822 |
Palbociclib | 180614_BG_02 | 16577 | 0.0169 | 35 | 245 | 12 | 17 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_1 | 280 | 0.0166 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00339 | 0.9867 |
Trametinib | 180622_BG_6 | 7466 | 0.0381 | 155 | 135 | 13 | 18 | Trametinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 290 | 0.0374 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.01127 | 0.6132 |
Palbociclib | 180614_BG_03 | 16771 | 0.0236 | 93 | 305 | 13 | 7 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_6 | 398 | 0.0232 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00319 | 0.9922 |
Neratinib | 180622_BG_6 | 18955 | 0.0266 | 139 | 369 | 13 | 12 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 508 | 0.0261 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00002 | 0.9764 |
Alpelisib | 180622_BG_6 | 20368 | 0.0292 | 92 | 505 | 12 | 14 | Alpelisib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 597 | 0.0285 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00235 | 1.0076 |
Alpelisib | 180614_BG_03 | 17461 | 0.0174 | 55 | 249 | 13 | 15 | Alpelisib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_6 | 304 | 0.0171 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00288 | 1.0111 |
Neratinib | 180622_BG_8 | 19948 | 0.0250 | 33 | 466 | 6 | 7 | Neratinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_9 | 499 | 0.0244 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00172 | 0.9985 |
Trametinib | 180622_BG_7 | 7553 | 0.0334 | 107 | 149 | 7 | 3 | Trametinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_4 | 256 | 0.0328 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00666 | 0.6173 |
Trametinib | 180622_BG_7 | 7891 | 0.0230 | 50 | 133 | 13 | 21 | Trametinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_6 | 183 | 0.0227 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00346 | 0.6328 |
Alpelisib | 180703_BG_10 | 21342 | 0.0259 | 35 | 518 | 12 | 14 | Alpelisib | 0.003326667 | treatment | 72 | 3 | MCF10A-GM_3 | 553 | 0.0253 | 1387.8 | 74.9 | 21564 | 711.9 | 0.0318 | -0.00654 | 0.9948 |
Etoposide | 180622_BG_7 | 19471 | 0.0193 | 45 | 332 | 12 | 18 | Etoposide | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_6 | 377 | 0.0190 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00713 | 0.9880 |
Dasatinib | 180622_BG_7 | 19473 | 0.0158 | 32 | 276 | 10 | 18 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_5 | 308 | 0.0156 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.01055 | 0.9880 |
Etoposide | 180622_BG_8 | 21315 | 0.0229 | 52 | 438 | 11 | 4 | Etoposide | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_7 | 490 | 0.0225 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00365 | 1.0276 |
Etoposide | 180622_BG_7 | 20449 | 0.0260 | 53 | 481 | 10 | 3 | Etoposide | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_4 | 534 | 0.0254 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00068 | 1.0093 |
Dasatinib | 180622_BG_7 | 19050 | 0.0223 | 41 | 385 | 13 | 18 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_6 | 426 | 0.0219 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00425 | 0.9785 |
Etoposide | 180622_BG_7 | 19564 | 0.0203 | 35 | 362 | 10 | 20 | Etoposide | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_5 | 397 | 0.0199 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00624 | 0.9901 |
Etoposide | 180622_BG_8 | 19762 | 0.0243 | 31 | 450 | 11 | 7 | Etoposide | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_8 | 481 | 0.0238 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00236 | 0.9944 |
Dasatinib | 180622_BG_8 | 20978 | 0.0317 | 59 | 608 | 11 | 19 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_9 | 667 | 0.0308 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00469 | 1.0206 |
Dasatinib | 180622_BG_6 | 18449 | 0.0243 | 99 | 351 | 12 | 4 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_3 | 450 | 0.0238 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00231 | 0.9648 |
Dasatinib | 180622_BG_7 | 19501 | 0.0232 | 68 | 386 | 10 | 17 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_4 | 454 | 0.0228 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00337 | 0.9887 |
Dasatinib | 180622_BG_8 | 17506 | 0.0248 | 53 | 383 | 6 | 19 | Dasatinib | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_7 | 436 | 0.0243 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | -0.00182 | 0.9424 |
Etoposide | 180622_BG_8 | 19941 | 0.0272 | 49 | 495 | 14 | 8 | Etoposide | 0.003326667 | treatment | 72 | 2 | MCF10A-GM_9 | 544 | 0.0266 | 832.0 | 168.3 | 20016 | 537.9 | 0.0261 | 0.00043 | 0.9984 |