LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist B in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20359)
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| Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Taxol | 180614_BG_04 | 454 | 0.7472 | 175 | 295 | 14 | 15 | Paclitaxel | 0.312706472 | treatment | 72 | 1 | MCF10A-GM_8 | 470 | 0.5087 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.48866 | -0.1459 |
| Palbociclib | 180614_BG_02 | 17421 | 0.0127 | 25 | 196 | 10 | 12 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_1 | 221 | 0.0125 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00747 | 1.0100 |
| Palbociclib | 180614_BG_02 | 17026 | 0.0174 | 21 | 276 | 11 | 9 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_2 | 297 | 0.0171 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00285 | 0.9992 |
| Palbociclib | 180614_BG_02 | 15417 | 0.0192 | 46 | 251 | 14 | 10 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_3 | 297 | 0.0189 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00110 | 0.9532 |
| Palbociclib | 180614_BG_03 | 15761 | 0.0210 | 90 | 243 | 6 | 19 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_4 | 333 | 0.0207 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00070 | 0.9633 |
| Palbociclib | 180614_BG_03 | 16827 | 0.0148 | 39 | 211 | 12 | 14 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_5 | 250 | 0.0146 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00536 | 0.9937 |
| Palbociclib | 180614_BG_03 | 16608 | 0.0185 | 59 | 249 | 13 | 6 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_6 | 308 | 0.0182 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00179 | 0.9876 |
| Palbociclib | 180614_BG_04 | 16981 | 0.0189 | 91 | 232 | 8 | 20 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_7 | 323 | 0.0187 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00133 | 0.9980 |
| Palbociclib | 180614_BG_04 | 17013 | 0.0193 | 99 | 231 | 12 | 6 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_8 | 330 | 0.0190 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00097 | 0.9989 |
| Palbociclib | 180614_BG_04 | 16684 | 0.0244 | 118 | 292 | 13 | 6 | Palbociclib | 0.001081167 | treatment | 72 | 1 | MCF10A-GM_9 | 410 | 0.0240 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00399 | 0.9897 |
| Palbociclib | 180614_BG_02 | 16577 | 0.0169 | 35 | 245 | 12 | 17 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_1 | 280 | 0.0166 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00339 | 0.9867 |
| Palbociclib | 180614_BG_02 | 14714 | 0.0198 | 61 | 232 | 13 | 8 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_2 | 293 | 0.0195 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00047 | 0.9319 |
| Palbociclib | 180614_BG_02 | 14825 | 0.0187 | 33 | 245 | 13 | 10 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_3 | 278 | 0.0184 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00159 | 0.9353 |
| Palbociclib | 180614_BG_03 | 15770 | 0.0169 | 73 | 195 | 6 | 3 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_4 | 268 | 0.0167 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00329 | 0.9636 |
| Palbociclib | 180614_BG_03 | 17048 | 0.0178 | 68 | 237 | 8 | 15 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_5 | 305 | 0.0176 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00242 | 0.9998 |
| Palbociclib | 180614_BG_03 | 16771 | 0.0236 | 93 | 305 | 13 | 7 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_6 | 398 | 0.0232 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00319 | 0.9922 |
| Palbociclib | 180614_BG_04 | 17288 | 0.0239 | 145 | 272 | 4 | 15 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_7 | 417 | 0.0236 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00356 | 1.0064 |
| Palbociclib | 180614_BG_04 | 16619 | 0.0276 | 152 | 311 | 7 | 5 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_8 | 463 | 0.0271 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00711 | 0.9879 |
| Palbociclib | 180614_BG_04 | 16821 | 0.0240 | 131 | 276 | 8 | 7 | Palbociclib | 0.003326667 | treatment | 72 | 1 | MCF10A-GM_9 | 407 | 0.0236 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00363 | 0.9935 |
| Palbociclib | 180614_BG_02 | 16291 | 0.0159 | 17 | 243 | 5 | 22 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_1 | 260 | 0.0157 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00429 | 0.9786 |
| Palbociclib | 180614_BG_02 | 11181 | 0.0199 | 58 | 166 | 6 | 3 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_2 | 224 | 0.0196 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00036 | 0.8114 |
| Palbociclib | 180614_BG_02 | 15116 | 0.0159 | 23 | 218 | 14 | 22 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_3 | 241 | 0.0157 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00430 | 0.9442 |
| Palbociclib | 180614_BG_03 | 17221 | 0.0197 | 56 | 284 | 12 | 22 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_4 | 340 | 0.0194 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | -0.00063 | 1.0046 |
| Palbociclib | 180614_BG_03 | 13504 | 0.0204 | 75 | 202 | 13 | 10 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_5 | 277 | 0.0201 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00010 | 0.8934 |
| Palbociclib | 180614_BG_03 | 15697 | 0.0212 | 53 | 281 | 13 | 19 | Palbociclib | 0.00998 | treatment | 72 | 1 | MCF10A-GM_6 | 334 | 0.0208 | 889.0 | 105.5 | 17054 | 348.0 | 0.0200 | 0.00084 | 0.9615 |