LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
Download: Excel (XLSX), Comma-separated (CSV)
Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Palbociclib | 180619_MC_10 | 1431 | 0.0626 | 70 | 24 | 6 | 15 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_2 | 94 | 0.0616 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.03857 | 0.1944 |
Palbociclib | 180619_MC_10 | 1699 | 0.0707 | 82 | 44 | 11 | 4 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_3 | 126 | 0.0690 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.04597 | 0.2401 |
Palbociclib | 180619_MC_11 | 2443 | 0.0367 | 61 | 31 | 6 | 18 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_4 | 92 | 0.0363 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01322 | 0.3428 |
Palbociclib | 180619_MC_11 | 2522 | 0.0426 | 84 | 27 | 10 | 16 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_5 | 111 | 0.0422 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01908 | 0.3521 |
Palbociclib | 180619_MC_11 | 2625 | 0.0396 | 76 | 31 | 11 | 18 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_6 | 107 | 0.0392 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01609 | 0.3641 |
Palbociclib | 180619_MC_12 | 2744 | 0.0546 | 115 | 41 | 4 | 13 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_7 | 156 | 0.0538 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.03072 | 0.3774 |
Palbociclib | 180619_MC_12 | 2558 | 0.0648 | 127 | 47 | 9 | 18 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_8 | 174 | 0.0637 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.04062 | 0.3563 |
Palbociclib | 180619_MC_12 | 3266 | 0.0452 | 117 | 36 | 11 | 20 | Palbociclib | 3.160329361 | treatment | 72 | 2 | MCF10A-GM_9 | 153 | 0.0447 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.02168 | 0.4309 |
Trametinib | 180619_MC_10 | 12370 | 0.0195 | 69 | 173 | 9 | 20 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_1 | 242 | 0.0192 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00389 | 0.9153 |
Trametinib | 180619_MC_10 | 12512 | 0.0174 | 61 | 158 | 10 | 4 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_2 | 219 | 0.0172 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00587 | 0.9201 |
Trametinib | 180619_MC_10 | 12386 | 0.0201 | 53 | 197 | 11 | 11 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_3 | 250 | 0.0198 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00329 | 0.9159 |
Trametinib | 180619_MC_11 | 11901 | 0.0256 | 102 | 205 | 3 | 19 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_4 | 307 | 0.0251 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00207 | 0.8992 |
Trametinib | 180619_MC_11 | 11738 | 0.0217 | 55 | 201 | 4 | 17 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_5 | 256 | 0.0213 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00173 | 0.8935 |
Trametinib | 180619_MC_11 | 11326 | 0.0198 | 64 | 161 | 14 | 19 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_6 | 225 | 0.0195 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00360 | 0.8787 |
Trametinib | 180619_MC_12 | 13429 | 0.0257 | 109 | 239 | 5 | 16 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_7 | 348 | 0.0253 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00219 | 0.9501 |
Trametinib | 180619_MC_12 | 12881 | 0.0333 | 138 | 296 | 7 | 11 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_8 | 434 | 0.0326 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00952 | 0.9324 |
Trametinib | 180619_MC_12 | 14160 | 0.0200 | 75 | 209 | 12 | 19 | Trametinib | 0.000332667 | treatment | 72 | 2 | MCF10A-GM_9 | 284 | 0.0197 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00341 | 0.9729 |
Trametinib | 180619_MC_10 | 9272 | 0.0145 | 29 | 106 | 6 | 8 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_1 | 135 | 0.0144 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00872 | 0.7982 |
Trametinib | 180619_MC_10 | 7574 | 0.0168 | 54 | 74 | 10 | 19 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_2 | 128 | 0.0166 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00646 | 0.7203 |
Trametinib | 180619_MC_10 | 7318 | 0.0201 | 52 | 96 | 14 | 21 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_3 | 148 | 0.0198 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00325 | 0.7074 |
Trametinib | 180619_MC_11 | 8259 | 0.0290 | 54 | 187 | 5 | 5 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_4 | 241 | 0.0284 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00528 | 0.7532 |
Trametinib | 180619_MC_11 | 8941 | 0.0291 | 90 | 173 | 7 | 15 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_5 | 263 | 0.0286 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00550 | 0.7839 |
Trametinib | 180619_MC_11 | 7945 | 0.0339 | 88 | 184 | 7 | 21 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_6 | 272 | 0.0331 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.01003 | 0.7384 |
Trametinib | 180619_MC_12 | 8947 | 0.0290 | 93 | 169 | 4 | 18 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_7 | 262 | 0.0285 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00538 | 0.7842 |
Trametinib | 180619_MC_12 | 9131 | 0.0246 | 131 | 97 | 9 | 19 | Trametinib | 0.000998 | treatment | 72 | 2 | MCF10A-GM_8 | 228 | 0.0244 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00129 | 0.7922 |