LINCS MCF 10A Common Project: Fixed-time-point sensitivity measures of the MCF 10A breast cell line to 8 small molecule perturbagens. Repeat performed by Scientist A in 2019 to assess reproducibility. Dataset 1 of 2: Normalized growth rate inhibition values. - Dataset (ID:20358)
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Small Molecule | barcode | cell_count | frac_dead | corpse_count | cell_count_dead | row | column | agent | concentration | role | timepoint | replicate | cell_line | dead_count | fraction_dead | cell_count__time0 | dead_count__time0 | cell_count__ctrl | dead_count__ctrl | fraction_dead__ctrl | increase_fraction_dead | GRvalue |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Etoposide | 180619_MC_10 | 659 | 0.1323 | 82 | 16 | 4 | 19 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_2 | 98 | 0.1295 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.10638 | 0.0079 |
Etoposide | 180619_MC_10 | 732 | 0.1621 | 113 | 24 | 8 | 20 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_3 | 137 | 0.1577 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.13458 | 0.0313 |
Etoposide | 180619_MC_11 | 756 | 0.1159 | 81 | 16 | 6 | 8 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_4 | 97 | 0.1137 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.09064 | 0.0386 |
Etoposide | 180619_MC_11 | 749 | 0.1092 | 75 | 15 | 14 | 4 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_5 | 90 | 0.1073 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.08420 | 0.0365 |
Etoposide | 180619_MC_11 | 713 | 0.1040 | 66 | 15 | 14 | 17 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_6 | 81 | 0.1020 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.07894 | 0.0254 |
Etoposide | 180619_MC_12 | 710 | 0.2364 | 174 | 35 | 4 | 3 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_7 | 209 | 0.2274 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.20435 | 0.0244 |
Etoposide | 180619_MC_12 | 689 | 0.1871 | 118 | 33 | 8 | 10 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_8 | 151 | 0.1798 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.15669 | 0.0177 |
Etoposide | 180619_MC_12 | 639 | 0.1997 | 122 | 30 | 12 | 4 | Etoposide | 3.193598006 | treatment | 72 | 2 | MCF10A-GM_9 | 152 | 0.1922 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.16909 | 0.0011 |
Etoposide | 180619_MC_10 | 754 | 0.0971 | 60 | 19 | 4 | 15 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_1 | 79 | 0.0948 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.07176 | 0.0380 |
Etoposide | 180619_MC_10 | 708 | 0.1110 | 58 | 27 | 6 | 22 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_2 | 85 | 0.1072 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.08411 | 0.0238 |
Etoposide | 180619_MC_10 | 765 | 0.1130 | 49 | 43 | 10 | 7 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_3 | 92 | 0.1074 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.08428 | 0.0413 |
Etoposide | 180619_MC_11 | 723 | 0.1418 | 95 | 21 | 4 | 13 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_4 | 116 | 0.1383 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.11519 | 0.0285 |
Etoposide | 180619_MC_11 | 749 | 0.2275 | 183 | 29 | 7 | 17 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_5 | 212 | 0.2206 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.19753 | 0.0365 |
Etoposide | 180619_MC_11 | 811 | 0.0964 | 71 | 14 | 14 | 16 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_6 | 85 | 0.0949 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.07179 | 0.0547 |
Etoposide | 180619_MC_12 | 811 | 0.2629 | 178 | 82 | 9 | 8 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_6 | 260 | 0.2428 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.21969 | 0.0547 |
Etoposide | 180619_MC_12 | 767 | 0.2744 | 184 | 77 | 13 | 7 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_7 | 261 | 0.2539 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.23082 | 0.0419 |
Etoposide | 180619_MC_12 | 760 | 0.1966 | 120 | 53 | 13 | 12 | Etoposide | 9.98 | treatment | 72 | 2 | MCF10A-GM_8 | 173 | 0.1854 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.16235 | 0.0398 |
Neratinib | 180619_MC_10 | 15121 | 0.0272 | 62 | 351 | 3 | 13 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_1 | 413 | 0.0266 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | 0.00351 | 1.0014 |
Neratinib | 180619_MC_10 | 14803 | 0.0178 | 51 | 213 | 8 | 22 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_2 | 264 | 0.0175 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00555 | 0.9922 |
Neratinib | 180619_MC_10 | 15146 | 0.0210 | 53 | 266 | 11 | 17 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_3 | 319 | 0.0206 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00245 | 1.0022 |
Neratinib | 180619_MC_11 | 14858 | 0.0227 | 79 | 260 | 3 | 17 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_4 | 339 | 0.0223 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00077 | 0.9938 |
Neratinib | 180619_MC_11 | 15178 | 0.0173 | 46 | 217 | 14 | 10 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_5 | 263 | 0.0170 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00604 | 1.0031 |
Neratinib | 180619_MC_11 | 14103 | 0.0208 | 39 | 255 | 14 | 11 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_6 | 294 | 0.0204 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00265 | 0.9711 |
Neratinib | 180619_MC_12 | 14979 | 0.0228 | 90 | 253 | 4 | 5 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_7 | 343 | 0.0224 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00069 | 0.9973 |
Neratinib | 180619_MC_12 | 14972 | 0.0200 | 85 | 216 | 11 | 22 | Neratinib | 0.001081167 | treatment | 72 | 2 | MCF10A-GM_8 | 301 | 0.0197 | 635.9 | 71.1 | 15071 | 356.7 | 0.0231 | -0.00337 | 0.9971 |