High-content imaging of six breast cancer cell lines treated with a library of small molecule kinase inhibitors. - Dataset (ID:20244)
Data Columns
Download: Excel (XLSX), Comma-separated (CSV)
| Name | Description | Display Name | Data Type | Unit | Precision | Readout Type | Replicate | Comments |
|---|---|---|---|---|---|---|---|---|
| xCoordinate | X-coordinate of the region of interest in the image field | X-coordinate | Numeric | 0 | ||||
| row | Row | Numeric | 0 | |||||
| otherReagent2DetectionChannel | Other Reagent 2 Detection Channel | Numeric | 0 | |||||
| nuclearareaPixels | Area of the nucleus (pixels) | Nuclear area (pixels) | Numeric | 0 | ||||
| column | Column | Numeric | 0 | |||||
| nuclearintensityAu | Average nuclear intensity (AU) | Nuclear intensity (AU) | Numeric | 1 | ||||
| nuclearHaralickMoment2 | Haralick moment 2, measured in nucleus | Nuclear Haralick moment 2 | Numeric | 1 | ||||
| cytoplasmicHaralickMoment2 | Haralick moment 2, measured in cytoplasm | Cytoplasmic Haralick moment 2 | Numeric | 1 | ||||
| stddevofnuclearintensityAu | Standard deviation of nuclear intensity (AU) | Std Dev of nuclear intensity (AU) | Numeric | 2 | ||||
| cytoplasmintensityAu | Average cytoplasmic intensity (AU) | Cytoplasm intensity (AU) | Numeric | 2 | ||||
| nuclearlengthPixels | Length of the nucleus across the longest axis (pixels) | Nuclear length (pixels) | Numeric | 2 | ||||
| nuclearhalfwidthPixels | Half the width of the nucleus, perpendicular to the length (pixels) | Nuclear halfwidth (pixels) | Numeric | 2 | ||||
| stddevofcytoplasmintensityAu | Standard deviation of cytoplasmic intensity (AU) | Std Dev of cytoplasm intensity (AU) | Numeric | 2 | ||||
| cytoplasmicHaralickContrast | Haralick contrast, measured in cytoplasm | Cytoplasmic Haralick contrast | Numeric | 2 | ||||
| nuclearHaralickContrast | Haralick contrast, measured in nucleus | Nuclear Haralick contrast | Numeric | 2 | ||||
| nuclearRoundness | Roundness of the nucleus | Nuclear roundness | Numeric | 3 | ||||
| nuclearHaralickEntropy | Haralick entropy, measured in nucleus | Nuclear Haralick entropy | Numeric | 3 | ||||
| cytoplasmicHaralickEntropy | Haralick entropy, measured in cytoplasm | Cytoplasmic Haralick entropy | Numeric | 3 | ||||
| cytoplasmicthresholdadjstat17Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 7; threshold: 0.2; range:1-threshold to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 17 (Threshold: 0.2) | Numeric | 4 | ||||
| cytoplasmicthresholdadjstat17Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 7; threshold: 0.4; range:1-threshold to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 17 (Threshold: 0.4) | Numeric | 4 | ||||
| cytoplasmicthresholdadjstat25Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 6; threshold: 0.2; range:1+threshold to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 25 (Threshold: 0.2) | Numeric | 4 | ||||
| cytoplasmicthresholdadjstat18Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 8; threshold: 0.2; range:1-threshold to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 18 (Threshold: 0.2) | Numeric | 4 | ||||
| cytoplasmicthresholdadjstat18Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 8; threshold: 0.4; range:1-threshold to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 18 (Threshold: 0.4) | Numeric | 4 | ||||
| cytoplasmicthresholdadjstat25Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 6; threshold: 0.4; range:1+threshold to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 25 (Threshold: 0.4) | Numeric | 4 | ||||
| cytoplasmicThresholdAdjStat30 | Threshold Adjacency Statistic (neighboring pixels: 2; threshold: N/A; range:1 to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 30 | Numeric | 4 |