High-content imaging of six breast cancer cell lines treated with a library of small molecule kinase inhibitors. - Dataset (ID:20244)
Data Columns
Download: Excel (XLSX), Comma-separated (CSV)
| Name | Description | Display Name | Data Type | Unit | Precision | Readout Type | Replicate | Comments |
|---|---|---|---|---|---|---|---|---|
| nuclearthresholdadjstat3Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 2; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 3 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearthresholdadjstat2Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 1; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 2 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat2Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 1; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 2 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearthresholdadjstat1Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 0; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 1 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat1Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 0; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 1 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearradialmomentCenter | Nuclear radial moment (center) | Numeric | 4 | |||||
| nuclearradialmomentBorder | Nuclear radial moment (border) | Numeric | 4 | |||||
| nuclearHaralickMoment2 | Haralick moment 2, measured in nucleus | Nuclear Haralick moment 2 | Numeric | 1 | ||||
| nuclearHaralickIdm | Haralick inverse difference moment, measured in nucleus | Nuclear Haralick IDM | Numeric | 4 | ||||
| nuclearHaralickEntropy | Haralick entropy, measured in nucleus | Nuclear Haralick entropy | Numeric | 3 | ||||
| nuclearHaralickContrast | Haralick contrast, measured in nucleus | Nuclear Haralick contrast | Numeric | 2 | ||||
| nuclearHaralickAsm | Haralick angular second moment, measured in nucleus | Nuclear Haralick ASM | Numeric | 4 | ||||
| nuclearperimeterPixels | Length of nuclear perimeter (pixels) | Nuclear perimeter (pixels) | Numeric | 0 | ||||
| ratioOfNuclearPerimeterToArea | Ratio of nuclear perimeter to area | Numeric | 4 | |||||
| numberOfNuclei | Number of nuclei | Numeric | 0 | |||||
| nuclearhalfwidthPixels | Half the width of the nucleus, perpendicular to the length (pixels) | Nuclear halfwidth (pixels) | Numeric | 2 | ||||
| nuclearlengthPixels | Length of the nucleus across the longest axis (pixels) | Nuclear length (pixels) | Numeric | 2 | ||||
| nuclearRoundness | Roundness of the nucleus | Nuclear roundness | Numeric | 3 | ||||
| cytoplasmperimeterPixels | Length of cytoplasm perimeter (pixels) | Cytoplasm perimeter (pixels) | Numeric | 0 | ||||
| ratioOfCytoplasmPerimeterToArea | Ratio of cytoplasm perimeter to area | Numeric | 4 | |||||
| 90QuantileofnuclearintensityAu | 90% of the nuclear pixel intensities are below this value (AU) | 90% quantile of nuclear intensity (AU) | Numeric | 0 | ||||
| 80QuantileofnuclearintensityAu | 80% of the nuclear pixel intensities are below this value (AU) | 80% quantile of nuclear intensity (AU) | Numeric | 0 | ||||
| 70QuantileofnuclearintensityAu | 70% of the nuclear pixel intensities are below this value (AU) | 70% quantile of nuclear intensity (AU) | Numeric | 0 | ||||
| 60QuantileofnuclearintensityAu | 60% of the nuclear pixel intensities are below this value (AU) | 60% quantile of nuclear intensity (AU) | Numeric | 0 | ||||
| cytoplasmicThresholdAdjStat36 | Threshold Adjacency Statistic (neighboring pixels: 8; threshold: N/A; range:1 to max) (frequency), measured in cytoplasm | Cytoplasmic Threshold Adj Stat 36 | Numeric | 4 |