High-content imaging of six breast cancer cell lines treated with a library of small molecule kinase inhibitors. - Dataset (ID:20244)
Data Columns
Download: Excel (XLSX), Comma-separated (CSV)
| Name | Description | Display Name | Data Type | Unit | Precision | Readout Type | Replicate | Comments |
|---|---|---|---|---|---|---|---|---|
| yCoordinate | Y-coordinate of the region of interest in the image field | Y-coordinate | Numeric | 0 | ||||
| xCoordinate | X-coordinate of the region of interest in the image field | X-coordinate | Numeric | 0 | ||||
| stddevofnuclearintensityAu | Standard deviation of nuclear intensity (AU) | Std Dev of nuclear intensity (AU) | Numeric | 2 | ||||
| stddevofcytoplasmintensityAu | Standard deviation of cytoplasmic intensity (AU) | Std Dev of cytoplasm intensity (AU) | Numeric | 2 | ||||
| smName | Small molecule perturbagen | SM Name | small_molecule | |||||
| smallMolConcUnit | Small Mol Conc Unit | Text | ||||||
| smallMolConcentration | Small Mol Concentration | Text | ||||||
| row | Row | Numeric | 0 | |||||
| ratioOfNuclearPerimeterToArea | Ratio of nuclear perimeter to area | Numeric | 4 | |||||
| ratioOfCytoplasmPerimeterToArea | Ratio of cytoplasm perimeter to area | Numeric | 4 | |||||
| otherReagent2Name | Other reagent detected by fluorescence | Other Reagent 2 Name | other_reagent | |||||
| otherReagent2DetectionChannel | Other Reagent 2 Detection Channel | Numeric | 0 | |||||
| otherReagent1Name | Other reagent detected by fluorescence | Other Reagent 1 Name | other_reagent | |||||
| otherReagent1DetectionChannel | Other Reagent 1 Detection Channel | Numeric | 0 | |||||
| numberOfNuclei | Number of nuclei | Numeric | 0 | |||||
| nuclearthresholdadjstat9Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 8; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 9 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat9Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 8; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 9 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearthresholdadjstat8Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 7; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 8 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat8Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 7; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 8 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearthresholdadjstat7Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 6; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 7 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat7Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 6; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 7 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearthresholdadjstat6Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 5; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 6 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat6Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 5; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 6 (Threshold: 0.2) | Numeric | 4 | ||||
| nuclearthresholdadjstat5Threshold04 | Threshold Adjacency Statistic (neighboring pixels: 4; threshold: 0.4; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 5 (Threshold: 0.4) | Numeric | 4 | ||||
| nuclearthresholdadjstat5Threshold02 | Threshold Adjacency Statistic (neighboring pixels: 4; threshold: 0.2; range:1 +/- threshold) (frequency), measured in nucleus | Nuclear Threshold Adj Stat 5 (Threshold: 0.2) | Numeric | 4 |