PROTEOMICS:
PROTEOMICS_Assay_Name: DDA
PROTEOMICS_Assay_Type: TMT
PROTEOMICS_SamplePrep_Lysis_Buffer: SDS
PROTEOMICS_SamplePrep_Lysis_Protocol: see manuscript
PROTEOMICS_SamplePrep_Subcellular_Fractionation: FALSE
PROTEOMICS_SamplePrep_Subcellular_Fractionation_Target: NA
PROTEOMICS_SamplePrep_Protein_Reduction_Agent: DTT
PROTEOMICS_SamplePrep_Alkylation_Agent: IAA
PROTEOMICS_SamplePrep_Protein_Enrichment: FALSE
PROTEOMICS_SamplePrep_Protein_Enrichment_Target: NA
PROTEOMICS_SamplePrep_Protein_Fractionation: FALSE
PROTEOMICS_SamplePrep_Protein_Fractionation_mode: NA
PROTEOMICS_SamplePrep_Peptide_Enrichment: FALSE
PROTEOMICS_SamplePrep_Peptide_Enrichment_Target: NA
PROTEOMICS_SamplePrep_Peptide_Fractionation: TRUE
PROTEOMICS_SamplePrep_Peptide_Fractionation_mode: High pH Reversed Phase HPLC
PROTEOMICS_SamplePrep_Automation: FALSE
PROTEOMICS_SamplePrep_Digestion_Enzyme: Trypsin and LysC mix
PROTEOMICS_SamplePrep_Digestion_Standard: FALSE
PROTEOMICS_SamplePrep_Digestion_Standard_AA_sequence:
PROTEOMICS_MS_Instrument: Orbitrap Fusion Lumos Tribrid MS
PROTEOMICS_MS_Instrument_Software: Xcalibur
PROTEOMICS_MS_Instrument_Software_Version: 4.1
PROTEOMICS_MS_Instrument_Sample_Interface: LC
PROTEOMICS_Processing_Primary_Signal_Processing: GFY Core
PROTEOMICS_Processing_Primary_Signal_Processing_Version: 3.8
PROTEOMICS_Processing_Analyte_Detection_Mode: 2014-02-04_REVuniprot_HUMAN_02_2014_contam_sorted.fasta
PROTEOMICS_Processing_Analyte_Detection_FILE:
PROTEOMICS_Processing_Static_Modification_AA(+/-amu): Carbamidomethyl C(+57.021454); TMT K(+229.162932); TMT N-terminus(+229.162932)
PROTEOMICS_Processing_Differential_ModificationAA(+/-amu): Oxidation M(+15.994915)
PROTEOMICS_Processing_Statistical_Processing: www.github.com/datarail/msda
PROTEOMICS_Processing_Statistical_Processing_Version: NA